Genome-wide association study dissects the genetic control of plant height and branch number in response to low-phosphorus stress in Brassica napus

Background and AimsOilseed rape (Brassica napus) is one of the most important oil crops worldwide. Phosphorus (P) deficiency severely decreases the plant height and branch number of B. napus. However, the genetic bases controlling plant height and branch number in B. napus under P deficiency remain largely unknown. This study aims to mine candidate genes for plant height and branch number by genome-wide association study (GWAS) and determine low-P-tolerance haplotypes.MethodsAn association panel of B. napus was grown in the field with a low P supply (P, 0 kg ha⁻¹) and a sufficient P supply (P, 40 kg ha⁻¹) across 2 years and plant height and branch number were investigated. More than five million single-nucleotide polymorphisms (SNPs) were used to conduct GWAS of plant height and branch number at two contrasting P supplies.Key ResultsA total of 2127 SNPs were strongly associated (P < 6·25 × 10⁻⁰⁷) with plant height and branch number at two P supplies. There was significant correlation between phenotypic variation and the number of favourable alleles of associated loci on chromosomes A10 (chrA10_821671) and C08 (chrC08_27999846), which will contribute to breeding improvement by aggregating these SNPs. BnaA10g09290D and BnaC08g26640D were identified to be associated with chrA10_821671 and chrC08_27999846, respectively. Candidate gene association analysis and haplotype analysis showed that the inbred lines carrying ATT at BnaA10g09290Hap1 and AAT at BnaC08g26640Hap1 had greater plant height than lines carrying other haplotype alleles at low P supply.ConclusionOur results demonstrate the power of GWAS in identifying genes of interest in B. napus and provided insights into the genetic basis of plant height and branch number at low P supply in B. napus. Candidate genes and favourable haplotypes may facilitate marker-based breeding efforts aimed at improving P use efficiency in B. napus.     

Association of dietary and serum selenium concentrations with glucose level and risk of diabetes mellitus: A cross sectional study of national health and nutrition examination survey, 1999-2006

BackgroundThe associations among dietary selenium intake, serum selenium concentration, plasma glucose and glycosylated hemoglobin levels, and diabetes risk remain controversial. This study aimed to evaluate these associations in adults from the United States.MethodsWe conducted a cross-sectional study of participants aged 18 years and older who participated in the National Health and Nutrition Examination Survey. Between 1999 and 2006, a total of 41,474 participants were initially included in this study. Multivariable linear or logistic regression analysis was used to investigate the association between dietary selenium intake and serum selenium concentrations, glucose level, and diabetes risk.ResultsThe average age of the participants was 30.32 ± 23.95 years, and 48.72 % were men. Their mean dietary selenium intake and mean serum selenium concentration were 98 ± 55 μg per day and 129 ± 22 ng/mL, respectively. Compared with t he lowest quartile of dietary selenium intake, the highest quartile was associated with elevated plasma glucose levels (β = 2.412, 95 % confidence interval [CI]: 0.420, 4.403, P = 0.018), glycosylated hemoglobin levels (β = 0.080, 95 % CI: 0.041, 0.119, P < 0.001), and diabetes risk (odds ratio [OR] = 2.139, 95 % CI: 1.763, 2.596, P < 0.001). Higher serum selenium was also associated with increased plasma glucose levels (β = 12.454, 95 % CI: 4.122, 20.786, P = 0.003) and glycosylated hemoglobin levels (β = 0.326, 95 % CI: 0.187, 0.465, P < 0.001). A generalized additive model with a spline curve suggested a nonlinear relationship between dietary selenium intake, serum selenium and glucose levels, and diabetes risk.ConclusionsDietary selenium intake and serum selenium were positively associated with elevated levels of plasma glucose and glycosylated hemoglobin, and the relationships were nonlinear. Additional selenium supplementation for patients with diabetes may not be recommended.     

Triton X-114 cloud point extraction to subfractionate blood plasma proteins for two-dimensional gel electrophoresis

A simple and reproducible procedure for enrichment of a plasma protein subfraction suitable for two-dimensional polyacrylamide gel electrophoresis (2DE) was developed, using a Triton X-114-based cloud point extraction (CPE). Appropriate conditions for such a CPE procedure were found by SDS-PAGE to be a plasma protein concentration of about 10 mg/ml in 3% (w/v) Triton X-114. 2DE of proteins obtained by CPE of 400 μl of human plasma revealed about 200 spots constituting a spot pattern very different from the pattern of total plasma. The CPE procedure only had a limited contribution to the technical variation. Identification of about 60 spots, representing only 22 proteins, revealed that several proteins in the obtained subfraction were present in more isoforms or modifications. Among these were apolipoproteins (A-1, D, E, L1, and M), haptoglobin-related protein, phosphatidylcholine-sterol acyltransferase, serum amyloid A, and serum paraoxonase/arylesterase 1, which are proteins of a hydrophobic nature, as in plasma they relate to lipoprotein particles. Thus, Triton X-114-based CPE is a simple plasma prefractionation tool, attractive for detailed 2DE studies of hydrophobic plasma proteins and their isoforms or modifications.     

Molecular determinants for the action of general anesthetics at recombinant α2β3γ2γ-aminobutyric acidA receptors

General anesthetics modulate the activity of ligand-gated ion channels including the GABA(A) receptor. Mutational studies mainly on the benzodiazepine-insensitive alpha(2)beta(1(M286W)) and alpha(6)beta(3(N289M))gamma(2) GABA(A) receptors revealed that a serine in transmembrane domain 2 and a methionine in transmembrane domain 3 are essential for the action of most general anesthetics. We investigated whether these residues would similarly be relevant for their action at the benzodiazepine-sensitive GABA receptor subtype, alpha(2)beta(3)gamma(2). We found that not only the N265M but also the M286W mutation nearly abolished the modulatory effect of etomidate. However, the anti-convulsant loreclezole, a structural homologue of etomidate, was inactive on the N265M mutant, but displayed normal modulatory activity on the M286W mutant. Both mutations did not affect the modulatory action of the neurosteroid alphaxalone. The direct action of alphaxalone, however, was dramatically increased in the M286W mutant to about twice the maximal GABA current but not significantly affected in the N265M mutant. These data demonstrate that the structural requirements for modulatory and direct actions of various general anesthetics are distinct. The molecular switches induced by these mutations can be exploited to identify the molecular determinants for the action of general anesthetics.     

Associations of total blood mercury and blood methylmercury concentrations with diabetes in adults: An exposure-response analysis of 2005-2018 NHANES

ObjectiveTo examine the exposure-response relationship between mercury exposure and diabetes in adults, and to explore the possible effect modifications by selenium and omega-3 fatty acids.MethodsBiomarker data (total blood mercury and blood methylmercury) from individuals ≥20 years of age were obtained from the 2005–2018 NHANES. Diabetes was defined through questionnaires, fasting plasma glucose, 2 -h plasma glucose and hemoglobin A_1c levels. The exposure-response relationship between mercury exposure and diabetes was assessed with logistic regression and restricted cubic splines.ResultsComparing the highest to lowest quartile of exposure, the multivariable-adjusted odds ratio (95 % CI) of diabetes was 0.76 (0.63−0.92) with total blood mercury and 0.82 (0.66−1.00) with blood methylmercury. The inverse associations between total blood mercury [0.55 (0.40−0.77)] and blood methylmercury [0.61 (0.38−0.97)] and diabetes were observed among individuals having higher intakes of selenium (P_{for interaction}<0.05). Trends toward lower odds of diabetes with mercury exposure were mainly confined to individuals having higher intakes of omega-3 fatty acid, but the interactions were not significant. The inverse associations between total blood mercury and blood methylmercury and diabetes remained in sensitivity analyses after excluding patients with hypertension that may change their dietary intake of fish. Exposure-response analyses showed an initial decrease in odds of diabetes followed by a platform or a weaker decrease beyond 3 μg/L of total blood mercury and methylmercury concentrations, respectively.ConclusionsTotal blood mercury and blood methylmercury concentrations were inversely associated with diabetes in adults, and the associations were modified by selenium.     

Baroreflex sensitivity: mechanisms and measurement

This article is a brief review of baroreflex physiology, the definition and functional meaning of baroreflex sensitivity, and the methods used to measure baroreflex sensitivity. The arterial baroreflex is important for haemodynamic stability and for cardioprotection, and it has convincingly been demonstrated that baroreflex sensitivity, even when assessed with different methods, has a strong prognostic value. Development of new baroreflex assessing procedures is still ongoing, with a focus on increased reliability in difficult measuring circumstances, e.g., in patients with a weak baroreflex and in patients with frequent arrhythmias.     

Feeble Weekly Rhythmicity in Hematological,Cardiovascular, and Thermal Parameters in the Horse

The homeostatic control of physiological processes is affected by a variety of temporal programs, such as circadian rhythms, estrous cycles, and circannual rhythms. The existence of circaseptan rhythms (endogenous rhythms with the duration of a week) has been postulated but not properly verified. In this study, we compared plasma concentration of lactic acid, systolic and diastolic blood pressure, and rectal temperature in athletic horses (maintained under a weekly training schedule) with those in sedentary horses (maintained under a constant schedule throughout the week). Although exercise had robust acute effects on the measured parameters, measurements conducted early in the morning or in the evening showed significant weekly rhythmicity only in one of the parameters (plasma concentration of lactic acid) in a few animals. This rhythmicity was feeble, was present only in athletic horses, and vanished if rigorous statistical criteria were applied. In contrast, 24 h rhythmicity was significant in all parameters in all horses. We conclude that the overall 7-day pattern in physiological parameters of the horse is feeble and is caused by the weekly schedule of activity. The available evidence does not support the notion of endogenous, circaseptan rhythms.     

Single-cell RNA sequencing identifies novel cell types in Drosophila blood

Drosophila has been extensively used to model the human blood-immune system,as both systems share many developmental and immune response mechanisms.However,while many human blood cell types have been identified,only three were found in flies:plasmatocytes,crystal cells and lamellocytes.To better understand the complexity of fly blood system,we used single-cell RNA sequencing technology to generate co mprehensive gene expression profiles for Drosophila circulating blood cells.In addition to the known cell types,we identified two new Drosophila blood cell types:thanacytes and primocytes.Thanacytes,which express many stimulus response genes,are involved in distinct responses to different types of bacteria.Primocytes,which express cell fate commitment and signaling genes,appear to be involved in keeping stem cells in the circulating blood.Furthermore,our data revealed four novel plasmatocyte subtypes(Ppn+,CAH7~+,Lsp~+ and reservoir plasmatocytes),each with unique molecular identities and distinct predicted functions.We also identified cross-species markers from Drosophila hemocytes to human blood cells.Our analysis unveiled a more complex Drosophila blood system and broadened the scope of using Drosophila to model human blood system in development and disease.     

Density influences accuracy of model‐based estimates for a forest songbird

Golden‐cheeked Warblers (Setophaga chrysoparia) are endangered songbirds that breed exclusively in the Ashe juniper (Juniperus ashei) and oak (Quercus spp.) woodlands of central Texas. Despite being the focus of numerous studies, we still know little about the size of the range‐wide breeding population and how density varies across the spectrum of juniper co‐dominated woodlands. Models that have been tested and shown to be accurate are needed to help develop management and conservation guidelines. We evaluated the accuracy and bias of density estimates from binomial mixture models, the dependent double‐observer method, and distance sampling by comparing them to actual densities determined by intensive territory monitoring on plots in the Balcones Canyonlands Preserve, Austin, Texas. We found that the binomial mixture models consistently overestimated density by 1.1–3.2 times (actual density = 0.07–0.46 males/ha), and the other two models overestimated by 1.1–29.8 times at low density and underestimated by 0.5–0.9 times at high density plots (actual density = 0.01–0.46 males/ha). The magnitude of error for all models was greatest at sites with few or no birds (<0.15 males/ha), with model performance improving as actual density increased. These non‐linear relationships indicate a lack of sensitivity with respect to true changes in density. Until systematic evaluation demonstrates that models such as those we tested provide accurate and unbiased density estimates for a given species over space and time, we recommend additional field tests to validate model‐based estimates. Continued model validation and refinement of point‐count methods are needed until accurate estimates are obtained across the density spectrum for Golden‐cheeked Warblers and other songbird species.     

Biogas from dedicated energy crops in Northern Italy: electric energy generation costs

Agricultural anaerobic digestion facilities are increasing in many EU member States and biomass supply is sometimes an issue. Dedicated energy crops (DEC) (mainly Maize, Triticale and Sorghum) are often used to integrate other substrates, such as agricultural residues, manure and organic waste. However, DEC production includes onerous agricultural operations (soil preparation, harvest, transport and storage) and may result in high unit costs (UC) of electric energy (EE, € kWhe⁻¹), compared to other renewable sources. In this work, seven different types of DEC (4 different combinations of crop successions) were cultivated in 30 different parcels, distributed along the Po Valley (northern Italy), using different varieties of seeds for each crop type. All agricultural operations were accounted for their costs (988–3346 € ha⁻¹). Biomass production was measured and reported as average of different parcels for each type of crop (31.2–187 Mg ha⁻¹). Biomass dry matter content and biogas potential were measured on representative samples and the EE obtainable was calculated (7.9–35.3 MWhe ha⁻¹), by assuming conservative factors (CH₄ contents in biogas and electric generation yields). The costs of ensiled biomass sensibly varied (13.8–40 € Mg⁻¹) among crop solutions, as well as the same UC of EE (0.068–0.150 € kWhe⁻¹). These costs were considered together with typical plant management and investment costs (plant size: 0.5–1 MWe): total UC of EE generation through anaerobic digestion (considering 100% DEC) varied in a relatively wide range (0.143–0.279 € kWhe⁻¹). When the biomass mix is ‘blended’ with low-cost residues or organic waste, this range could be lowered to 0.096–187 € kWhe⁻¹. Only this strategy and strong efforts in reducing technological investment/management costs can candidate biogas-based EE as a really competitive renewable alternative to traditional sources, in the next future.